Meta-analysis of the differential effects of habitat fragmentation and degradation on plant genetic diversity

Genetic diversity is a key factor for population survival and evolution. However, anthropogenic habitat disturbance can erode it, making populations more prone to extinction. Aiming to assess the global effects of habitat disturbance on plant genetic variation, we conducted a meta-analysis based on 92 case studies obtained from published literature. We compared the effects of habitat fragmentation and degradation on plant allelic richness and gene diversity (equivalent to expected heterozygosity) and tested whether such changes are sensitive to different life-forms, life spans, mating systems, and commonness. Anthropogenic disturbance had a negative effect on allelic richness, but not on gene diversity. Habitat fragmentation had a negative effect on genetic variation, whereas habitat degradation had no effect. When we examined the individual effects in fragmented habitats, allelic richness and gene diversity decreased, but this decrease was strongly dependent on certain plant traits. Specifically, common long-lived trees and self-incompatible species were more susceptible to allelic richness loss. Conversely, gene diversity decreased in common short-lived species (herbs) with self-compatible reproduction. In a wider geographical context, tropical plant communities were more sensitive to allelic richness loss, whereas temperate plant communities were more sensitive to gene diversity loss. Our synthesis showed complex responses to habitat disturbance among plant species. In many cases, the absence of effects could be the result of the time elapsed since the disturbance event or reproductive systems favoring self-pollination, but attention must be paid to those plant species that are more susceptible to losing genetic diversity, and appropriate conservation should be actions taken.     

Trees on the move: using decision theory to compensate for climate change at the regional scale in forest social-ecological systems

Regional Environmental Change - The adaptation of social-ecological systems such as managed forests depends largely on decisions taken by forest managers who must choose among a wide range of...     

Encounters between Antarctic limpets, <Emphasis Type="Italic">Nacella concinna</Emphasis>, and predatory sea stars, <Emphasis Type="Italic">Lysasterias</Emphasis> sp., in laboratory and field experiments

Antarctic limpets, Nacella concinna, from the Admiralty Bay (King George Island, South Shetlands) for at least part of the year (austral winter) co-exist with predatory sea stars Lysasterias sp. Our laboratory and field experiments established that the presence of Lysasterias sp. or its odour had considerable influence upon their behaviour. Limpets’ responses, consisting of shell mushrooming, shell rotation and flight, were distinctly different from their reaction to other stimuli, such as food and conspecific odours, or mechanical stimulation. Moreover, a significant impact of sea star presence on limpets’ activity was observed, with limpets fleeing to a distance of 60 cm from the predator. Such reactions allow limpets to lower the incidence of sea star predation, but at the cost of presumptive disrupting of foraging and an additional energy expended for locomotion. A visible difference was noted between two limpet populations, with the rockpool limpets responding only after physical contact with being touched by a sea star, and the subtidal ones responding at a distance of up to 20 cm.     

Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Persistent organochlorine compounds in soils and sediments of European high altitude mountain lakes

The composition of persistent organochlorine compounds (OC) in soils and sediments from two high altitude European mountain lakes, Redon in the Pyrenees and Ladove in the Tatra mountains, has been studied. Sediment cores from two additional lakes in the Tatra mountains, Starolesnianske Pleso and Dlugi Staw, have also been examined. DDTs (1.7-13 ng g(-1)) were the most abundant OC in soils followed by total polychlorobiphenyls (PCBs; 0.41-1.5 ng g(-1)) and hexachlorobenzene (HCB; 0.15-0.91 ng g(-1)). In sediments, the dominant OC were also DDTs (3.3-28 ng g(-1)) and PCBs (2.3-15 ng g(-1)). These concentrations are low, involving absence of major pollution sources in these high mountain regions. The downcore OC profiles in soils and sediments were similar but higher concentrations and steeper vertical gradients were observed in the latter. Radiometric determinations showed absence of significant OC transport from catchment to lake. The sediment-soil difference points therefore to a better retention of the OC load in sediments than soils which may be related to the low temperatures that are currently encountered at the bottom of the lake water column and the depletion of sediment bioturbation in these cold environments. Significant qualitative changes in the soil PCB distributions are observed downcore. These involve a dominance of the high molecular weight congeners in the top core sections and those of lower weight (i.e. less chlorinated) in the bottom. Anaerobic dechlorination of higher molecular weight congeners occurring in microsites, e.g. as observed in flooded or poorly drained soils, could be responsible for these changes. This process could be concurrent to bioturbation.     

Wheat volatile emissions modified by top-soil chemical characteristics and herbivory alter the performance of neighbouring wheat plants

Plant emission of volatile organic compounds (VOCs) has a significant impact on arthropods and plants and alters important functions in the agroecosystems. Three field source–sink microcosm experiments evaluated variation in wheat plants volatile emissions and its impact on neighbouring wheat plants’ performance caused by genotype, aphid herbivory and soil nutrient availability due to different cropping histories. An electronic nose detected qualitative differences in volatile emissions. Two of the experiments established the source–sink relationships forcing the volatiles through pipes. In these experiments wheat genotype was introduced as a variable of the source plants. In the third experiment, the emissions of volatiles dispersed naturally affecting the neighbourhood only by proximity and wheat genotype was a controlled factor. Plant genotype, aphid attack and soil chemical changes caused by different cropping histories affected wheat volatile emissions despite independent variations in plant biomass or resource allocation. This is the first report of changes in distant plant biomass according to neighbouring plant genotype and agricultural history. Wheat VOCs emissions were associated with changes in soil organic C, Ca, Mg, total nitrogen and cation exchange capacity caused by the different cropping histories of the soils tested. Variability in total biomass and resource allocation increased due to changes in VOCs emissions promoted by longer cropping history or aphid feeding in two genotypes. When volatiles were naturally dispersed into the neighbourhood, tiller weight in the sink individuals depended on plant genotype and cropping history of its neighbours (i.e. VOCs source). These findings highlight that ecological and environmental consequences of agricultural practices are more complex than normally thought.     

Virus Genome Quantification Does not Predict Norovirus Infectivity After Application of Food Inactivation Processing Technologies

When determining the effect of food processing on the infectivity of any contaminating virus, it is necessary to distinguish unambiguously between infectious and non-infectious viruses present. However, this can be difficult in the particular case of noroviruses (NoVs) because no reliable cell culture model is available. The aim of this study was to assess the use of molecular methods—RT real-time PCR (RT-qPCR) and enzymatic treatment (ET) coupled to RT-qPCR—to quantify the infectivity of NoV after application of various inactivating food-processing technologies. RT-qPCR and ET-RT-qPCR gave significantly different (P < 0.01) results concerning the reduction in viral genome counts by all inactivation procedures and conditions used, except for HHP treatment at 600 MPa for 5 min. These findings indicate that the ET prior to RT-qPCR has an effect on the estimation of the reduction of virus genome counts, and may eliminate genomes of affected virus particles. However, no correlation was found between the results obtained by ET-RT-qPCR and those obtained by cell culture. Therefore, the effect is presumably only partial, and not adequate to allow accurate estimation of virus inactivation. Consequently, our results indicate that the quantification of virus genomes by PCR, regardless of prior ET, is not adequate for establishing virus inactivation and/or infectivity. In addition, our results also illustrate that the general effect of virus inactivation is not directly correlated to effects on the integrity of virus genome and protein capsid. Presumably, inactivation by food processing is the consequence of effects on proteins involved in adhesion and invasion stages.